BioMCP

Provider

Aakaash Meduri

Classification

Community classification icon community

Est. Downloads

Info icon
This is our estimate of how many downloads occurred of this server across the MCP ecosystem (not specific to any single platform). We use a mix of publicly available data, social signals, and more to feed an algorithm that drives this estimation.
2.7k

Released On

Mar 4, 2025

Popularity Ranking

Info icon
Our estimate as to where this MCP server implementation ranks on the global leaderboard of usage.
#2,433 (#2,647 this week)

Enabling agent-based biomedical R&D via protein structure analysis capabilities

Related Servers

MCP Guide

qpd-v

Interactive tutorial and tools for understanding, implementing, and exploring MCP concepts and capabilities.

Classification

Community icon

community

Est Downloads (All Time)

3.8k

Release Date

Dec 18, 2024

UniProt

TakumiY235

Integrates with UniProt API to provide cached protein information for bioinformatics applications and protein research.

Classification

Community icon

community

Est Downloads (All Time)

1.3k

Release Date

Dec 8, 2024

MCP Reasoner

Jacck

Implements beam search and thought evaluation for structured problem-solving, enabling exploration of multiple...

Classification

Community icon

community

Est Downloads (All Time)

39.9k

Release Date

Dec 20, 2024

Biomart

John Zinno

Integrates with Biomart to enable advanced biological data queries, including gene information retrieval, ID...

Classification

Community icon

community

Est Downloads (All Time)

890

Release Date

Feb 27, 2025

PyMOL

GDAmitha

Integrates with PyMOL molecular visualization software to enable interactive protein structure analysis,...

Classification

Community icon

community

Est Downloads (All Time)

Release Date

Mar 12, 2025

Molecule Visualization (ChimeraX, PyMOL)

ChatMol

Connects AI systems to molecular visualization software like PyMol and ChimeraX, enabling direct command execution...

Classification

Community icon

community

Est Downloads (All Time)

12.6k

Release Date

Mar 20, 2025

PyMOL

Andre Watson

Enables bidirectional communication with PyMOL for visualizing and manipulating molecular structures, supporting...

Classification

Community icon

community

Est Downloads (All Time)

Release Date

Mar 21, 2025

BioMCP (Biomedical Database Integration)

GenomOncology

Integrates with biomedical databases including ClinicalTrials.gov, PubMed, and MyVariant.info to provide structured...

Classification

Official repository icon

official

Est Downloads (All Time)

67.9k

Release Date

Apr 5, 2025

PubMed

cyanheads

Enables AI systems to search, retrieve, and analyze biomedical literature from PubMed for evidence-based research,...

Classification

Community icon

community

Est Downloads (All Time)

9.5k

Release Date

May 25, 2025

UniProt

Augmented Nature

Integrates with UniProt's protein database through 26 specialized bioinformatics tools for protein searches, sequence...

Classification

Community icon

community

Est Downloads (All Time)

Release Date

May 27, 2025

PubChem

Augmented Nature

Integrates with PubChem chemical database to provide compound search, structure analysis, property calculation,...

Classification

Community icon

community

Est Downloads (All Time)

4.5k

Release Date

May 30, 2025

BioContext Knowledgebase

BioContextAI Team

Provides unified access to over 20 biomedical databases and research tools including protein databases (UniProt,...

Classification

Community icon

community

Est Visitors (All Time)

12.8k

Release Date

Jul 15, 2025

AlphaFold

Augmented Nature

Integrates with DeepMind's AlphaFold Protein Structure Database to retrieve protein structures, analyze confidence...

Classification

Community icon

community

Est Downloads (All Time)

4.3k

Release Date

Jul 24, 2025

BioPortal

Augmented Nature

Integrates with BioPortal's API to search, annotate, and explore over 1,200 biological ontologies including medical...

Classification

Community icon

community

Est Downloads (All Time)

1.2k

Release Date

Aug 14, 2025

Protein Data Bank

Augmented Nature

Integrates with the Protein Data Bank (PDB) to provide search, retrieval, and analysis capabilities for protein...

Classification

Community icon

community

Est Downloads (All Time)

2.4k

Release Date

Aug 20, 2025

Medical Agents AOP

The Swarm Corporation

Orchestrates specialized medical AI agents for blood data analysis, CBC interpretation, and clinical decision support

Classification

Community icon

community

Est Downloads (All Time)

445

Release Date

Nov 10, 2025

OneMCP

Radu Topala

Aggregates tools from multiple MCP servers with TF-IDF semantic search for natural language tool discovery

Classification

Community icon

community

Est Downloads (All Time)

148

Release Date

Nov 12, 2025

Medical APIs

Pascal Brokmeier

Unified access to biomedical APIs for drug discovery, pathway analysis, and genetic research

Classification

Community icon

community

Est Downloads (All Time)

1.3k

Release Date

Nov 13, 2025